PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0029s0085.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 425aa    MW: 45928.9 Da    PI: 7.7014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0029s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.13.9e-1097121226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C +++ t tC++G++C+F H+
  Sphfalx0029s0085.1.p  97 GEKMCAYYMTTSTCSFGASCRFDHP 121
                           6789********************9 PP

2zf-CCCH37.54e-12151176227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++  C ++++tG+CkyG +C+F H++
  Sphfalx0029s0085.1.p 151 GETVCAYYMKTGECKYGIKCRFDHPK 176
                           6789********************96 PP

3zf-CCCH29.31.5e-09212235427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             C ++ +tG CkyG++C+F+H++
  Sphfalx0029s0085.1.p 212 IDCVYYCKTGSCKYGASCRFNHPE 235
                           5799******************96 PP

4zf-CCCH40.74e-13290314327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C+ff++tG+C++G++C+F+H+p
  Sphfalx0029s0085.1.p 290 EPDCSFFMKTGECSFGPSCRFNHPP 314
                           789********************97 PP

5zf-CCCH35.91.2e-11347368526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C ++++tG Ck+G++CkF H+
  Sphfalx0029s0085.1.p 347 PCAYYMKTGACKFGPTCKFDHP 368
                           8********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.003195122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.34795123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-596121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-599120IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-7101121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521149177IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6149176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6151177IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9151176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6154175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432208236IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4208235IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6213235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5213236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4214235IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7287314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.976287315IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10290314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5291316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4293313IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774342370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6346369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5347367IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9347368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAASNPQLMY SMPPQYQEPV QYQYYATEQP PPPPPPLSPY PSVYSQPPPP PLPYDHQSLV  60
GGIKRSAEDA WGDPDYTKRA RPDSWGVVAG PFPQRPGEKM CAYYMTTSTC SFGASCRFDH  120
PTWVPYGGIA NWKEVTSGTP TDPASLPQRP GETVCAYYMK TGECKYGIKC RFDHPKDRPE  180
PTSHNDQTQK VATPIRSAAL NSKGLPIRPG EIDCVYYCKT GSCKYGASCR FNHPEANMAG  240
SRPGVPLFPV GAAAAQAPYT SAPIQYQMGQ ESAYAPGTSA VGPYPQRPSE PDCSFFMKTG  300
ECSFGPSCRF NHPPNRVPSV ISRPSSIVAA AVKLSLAGLP RRESGTPCAY YMKTGACKFG  360
PTCKFDHPTP GEVAAKALEA ARVEVPVMLD ASLSENSTLV LDDQSVLPPG TDVVVETYRS  420
TQQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001766711.11e-112predicted protein, partial
TrEMBLA9SK181e-112A9SK18_PHYPA; Predicted protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-78floral homeotic protein (HUA1)